Data input

Column

BayesTraits Header

Column

Restrictions

Reconstructions / Fossilisations

Priors

Tree

MCMC traces

Column

ML Chain

Column

ML Chain Density

ML Chain Violins

MCMC Diagnostics

Column

Effective Sampling Sizes

Mean Acceptance Rates

Total Average Acceptance Rates

Column

Maximum Likelohood Autocorrelation

Root State & Rate Estimates

Row

Root State

Root state probabilities for each run

Root state probabilities for each run

Transition Rates Network

Row

Transition Rates Densities

Density distributions of rate transition estimates. Line show mean rates.

Node Reconstructions

Column

Node Reconstruction / Fossilisation

Column

Phylogeny

RevJ Model Reduction

Row

Reverse Jump Model Sampling

No Reverse Jump used

Reverse Jump Model Ranking - Table

No Reverse Jump used

Reverse Jump Model Ranking - Barchart

No Reverse Jump used

Row

% Non-zero transitions

No Reverse Jump used

Three most frequently sampled model

No Reverse Jump used

Model Comparison - LogBF

Column

Stepping Stone Sampler

No stepping stones sampler set

Log Marginal Likelihood

No stepping stones sampler set

Log Bayes Factor

No stepping stones sampler set

Column

Stone Power

No stepping stones sampler set

Stone Marginal Likelihood

No stepping stones sampler set

Running Marginal Likelihood

No stepping stones sampler set